Welcome to proxl’s documentation!

Proxl is a web application and database for storing, viewing, analyzing, and sharing protein cross-linking mass spectrometry data.

Proxl is available to use free-of-charge at https://www.yeastrc.org/proxl_public/

Here you will find documentation for both using and installing proxl locally.

Using proxl

• Getting Started
• Project Overview Page
• Upload Data
• Image View Page (Circle Plot View)
• Image View Page (Protein Bar View)
• Structure View Page
• Peptides View Page
• Merged Peptides View Page
• Proteins View Page
• Merged Protein View Page
• Spectrum Viewer

Proxl Administration

• Installing Proxl
• Customize Data Locations
• Proxl SMTP Setup Guide
• Proxl Configuration
• Proxl XML Converter Development Guide
• PAWS Guide